3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12439

Details:

PFam ID : PF12439

PFam Domain Description : Glycogen debranching enzyme N terminal

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 171

Average sequence length: 218.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12439	B2IUX7_NOSP7_7_292	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12439	A9G601_SORC5_50_295	100

Sequence based PCA Plot of the family - PF12439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=214 Length=8
Motif2 Start=1 Length=14
Motif3 Start=227 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay