3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12437

Details:

PFam ID : PF12437

PFam Domain Description : Glutamine synthetase type III N terminal

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 280

Average sequence length: 162.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12437	B8CGK1_THAPS_5_100	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12437	F0Y415_9STRA_1_169	100

Sequence based PCA Plot of the family - PF12437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=48 Length=8
Motif2 Start=103 Length=8
Motif3 Start=59 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay