3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12436

Details:

PFam ID : PF12436

PFam Domain Description : Ubiquitin-specific protease 7

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 85

Average sequence length: 34.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12436	Q5JL54_ORYSJ_56_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12436	Q01E14_OSTTA_576_605	97.6

Sequence based PCA Plot of the family - PF12436 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay