3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12434

Details:

PFam ID : PF12434

PFam Domain Description : Malate dehydrogenase enzyme

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 33

Average sequence length: 23.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12434	A9TGP1_PHYPA_484_572	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12434	B6AYG6_9RHOB_7_38	100

Sequence based PCA Plot of the family - PF12434 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay