3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12431

Details:

PFam ID : PF12431

PFam Domain Description : Transcriptional regulator

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 87

Average sequence length: 29.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12431	D2YJS2_VIBMI_133_160	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12431	D5ECP0_AMICL_134_160	100

Sequence based PCA Plot of the family - PF12431 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay