3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12430

Details:

PFam ID : PF12430

PFam Domain Description : Abscisic acid G-protein coupled receptor

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 104

Average sequence length: 175.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12430	C4LVA8_ENTHI_176_355	80.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12430	Q5K8V4_CRYNE_467_685	100

Sequence based PCA Plot of the family - PF12430 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=160 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay