3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12423

Details:

PFam ID : PF12423

PFam Domain Description : Kinesin protein 1B

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 103

Average sequence length: 47.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12423	F0VPY1_NEOCA_766_810	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12423	E5SGS6_TRISP_661_706	91.1

Sequence based PCA Plot of the family - PF12423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay