3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12422

Details:

PFam ID : PF12422

PFam Domain Description : Condensin II non structural maintenance of chromosomes subunit

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 64

Average sequence length: 142.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12422	B3L9T5_PLAKH_202_338	74.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12422	C5KUD6_9ALVE_155_321	82

Sequence based PCA Plot of the family - PF12422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay