3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12418

Details:

PFam ID : PF12418

PFam Domain Description : Acyl-CoA dehydrogenase N terminal

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 549

Average sequence length: 31.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12418	B0DPX9_LACBS_200_250	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12418	D5WG75_BURSC_4_25	97.6

Sequence based PCA Plot of the family - PF12418 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=25 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay