3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12414

Details:

PFam ID : PF12414

PFam Domain Description : Calcitonin gene-related peptide regulator C terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 20

Average sequence length: 82.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12414	D2H9B2_AILME_256_342	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12414	D2H9B2_AILME_256_342	100

Sequence based PCA Plot of the family - PF12414 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay