3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12411

Details:

PFam ID : PF12411

PFam Domain Description : Choline sulfatase enzyme C terminal

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 88

Average sequence length: 52.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12411	B2H911_BURPS_14_68	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12411	C7MEQ7_BRAFD_466_512	91.9

Sequence based PCA Plot of the family - PF12411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay