3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12407

Details:

PFam ID : PF12407

PFam Domain Description : Homeobox protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 18

Average sequence length: 22.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12407	A0MM14_BRABE_297_368	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12407	B5B038_ASEAQ_54_71	100

Sequence based PCA Plot of the family - PF12407 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay