3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12402

Details:

PFam ID : PF12402

PFam Domain Description : NocA-like zinc-finger protein 1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 14

Average sequence length: 47.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12402	D0WKW8_9ACTO_4_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12402	Q4S286_TETNG_304_344	92.3

Sequence based PCA Plot of the family - PF12402 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay