3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12400

Details:

PFam ID : PF12400

PFam Domain Description : Vaculolar membrane protein

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 101

Average sequence length: 124.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12400	E1ZS05_9CHLO_85_247	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12400	Q22HI1_TETTH_373_536	100

Sequence based PCA Plot of the family - PF12400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=73 Length=8
Motif2 Start=140 Length=11
Motif3 Start=1 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay