3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12399

Details:

PFam ID : PF12399

PFam Domain Description : Branched-chain amino acid ATP-binding cassette transporter

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 2368

Average sequence length: 22.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12399	Q948X1_BRACM_491_527	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12399	D8FE44_9DELT_224_242	100

Sequence based PCA Plot of the family - PF12399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay