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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12397
Details:

PFam ID : PF12397

PFam Domain Description : U3 small nucleolar RNA-associated protein 10

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 120

Average sequence length: 120.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12397C4JR14_UNCRE_1_7138.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12397B0D7G9_LACBS_230_352100
Sequence based PCA Plot of the family - PF12397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=21 Length=18
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay