3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12393

Details:

PFam ID : PF12393

PFam Domain Description : Dr family adhesin

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 8

Average sequence length: 18.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12393	E4K551_9FIRM_3_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12393	P94779_ECOLX_1_21	85

Sequence based PCA Plot of the family - PF12393 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay