3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12392

Details:

PFam ID : PF12392

PFam Domain Description : Collagenase

Number of Sequence in 50% Dataset : 194

Number of Sequence in Full Dataset : 458

Average sequence length: 121.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12392	E4K551_9FIRM_3_90	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12392	D9RVA8_PREMB_402_551	100

Sequence based PCA Plot of the family - PF12392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=115 Length=8
Motif4 Start=135 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay