3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12388

Details:

PFam ID : PF12388

PFam Domain Description : Dual-action HEIGH metallo-peptidase

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 47

Average sequence length: 193.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12388	A6EKC7_9SPHI_197_373	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12388	A6G8C5_9DELT_2_230	100

Sequence based PCA Plot of the family - PF12388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=99 Length=8
Motif4 Start=136 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay