3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12374

Details:

PFam ID : PF12374

PFam Domain Description : Double-sex mab3 related transcription factor 1

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 114

Average sequence length: 61.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12374	C5HYK5_CLAGA_87_137	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12374	D2DIK3_9PERC_82_110	64

Sequence based PCA Plot of the family - PF12374 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay