3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12373

Details:

PFam ID : PF12373

PFam Domain Description : Major surface glycoprotein 2 C terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 31

Average sequence length: 28.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12373	C5YZM0_SORBI_319_371	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12373	B4X712_PNEJI_810_839	96.6

Sequence based PCA Plot of the family - PF12373 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay