3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12366

Details:

PFam ID : PF12366

PFam Domain Description : Cancer susceptibility candidate 1

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 93

Average sequence length: 218.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12366	Q1PQG7_DROMI_18_78	63.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12366	B4GUM2_DROPE_263_545	58

Sequence based PCA Plot of the family - PF12366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=123 Length=8
Motif3 Start=99 Length=8
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay