3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12362

Details:

PFam ID : PF12362

PFam Domain Description : DNA polymerase III gamma and tau subunits C terminal

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 139

Average sequence length: 114.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12362	A3W9E0_9SPHN_469_587	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12362	A3W9E0_9SPHN_469_587	100

Sequence based PCA Plot of the family - PF12362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=32 Length=8
Motif3 Start=110 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay