3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12354

Details:

PFam ID : PF12354

PFam Domain Description : Bacterial adhesion/invasion protein N terminal

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 87

Average sequence length: 52.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12354	D4PRY5_LISMO_1_58	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12354	E3YF77_LISMO_8_65	100

Sequence based PCA Plot of the family - PF12354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay