3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12353

Details:

PFam ID : PF12353

PFam Domain Description : Eukaryotic translation initiation factor 3 subunit G

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 148

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12353	A5K5V3_PLAVS_42_105	65.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12353	E9C8Q8_9EUKA_72_209	100

Sequence based PCA Plot of the family - PF12353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=51 Length=8
Motif4 Start=126 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay