3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12351

Details:

PFam ID : PF12351

PFam Domain Description : Function to find

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 67

Average sequence length: 177.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12351	A2R781_ASPNC_72_159	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12351	Q6CW51_KLULA_63_265	100

Sequence based PCA Plot of the family - PF12351 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=18 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay