3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12350

Details:

PFam ID : PF12350

PFam Domain Description : CTD kinase subunit gamma CTK3 C-terminus

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 53

Average sequence length: 66.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12350	Q4PHG1_USTMA_157_221	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12350	E6ZKK9_9BASI_157_253	100

Sequence based PCA Plot of the family - PF12350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=11 Length=17
Motif3 Start=77 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay