3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12348

Details:

PFam ID : PF12348

PFam Domain Description : CLASP N terminal

Number of Sequence in 50% Dataset : 182

Number of Sequence in Full Dataset : 465

Average sequence length: 203.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12348	D8MB64_BLAHO_4_147	89.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12348	Q234L4_TETTH_880_1134	100

Sequence based PCA Plot of the family - PF12348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=56 Length=11
Motif3 Start=174 Length=11
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay