3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12347

Details:

PFam ID : PF12347

PFam Domain Description : Holliday junction regulator protein family C-terminal repeat

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 64

Average sequence length: 60.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12347	B4KLR1_DROMO_90_130	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12347	Q497U3_MOUSE_21_77	93.6

Sequence based PCA Plot of the family - PF12347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=27
Motif2 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay