3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12344

Details:

PFam ID : PF12344

PFam Domain Description : Ultra-violet resistance protein B

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 1106

Average sequence length: 43.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12344	O92737_9FLAV_24_45	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12344	Q6QUN4_VIBAN_1_30	99.7

Sequence based PCA Plot of the family - PF12344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=8
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay