3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12343

Details:

PFam ID : PF12343

PFam Domain Description : Cold shock protein DEAD box A

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 25

Average sequence length: 63.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12343	O92737_9FLAV_24_45	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12343	F2G0N1_SALGL_568_618	100

Sequence based PCA Plot of the family - PF12343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay