3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12339

Details:

PFam ID : PF12339

PFam Domain Description : DNA-J related protein

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 66

Average sequence length: 123.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12339	F2G2W7_ALTMD_13_153	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12339	F2G2W7_ALTMD_13_153	100

Sequence based PCA Plot of the family - PF12339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=64 Length=8
Motif3 Start=1 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay