3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12330

Details:

PFam ID : PF12330

PFam Domain Description : Domain of unknown function (DUF3635)

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 117

Average sequence length: 82.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12330	B8PN42_POSPM_715_751	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12330	E7RA14_PICAD_520_625	100

Sequence based PCA Plot of the family - PF12330 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=21 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay