3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12329

Details:

PFam ID : PF12329

PFam Domain Description : TATA element modulatory factor 1 DNA binding

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 92

Average sequence length: 71.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12329	C4R1F5_PICPG_271_347	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12329	Q6CWH2_KLULA_129_178	95.6

Sequence based PCA Plot of the family - PF12329 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=50 Length=8
Motif2 Start=41 Length=8
Motif3 Start=32 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay