3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12327

Details:

PFam ID : PF12327

PFam Domain Description : FtsZ family, C-terminal domain

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 925

Average sequence length: 94.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12327	D4IMD9_9BACT_221_326	6.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12327	D4IMD9_9BACT_221_326	100

Sequence based PCA Plot of the family - PF12327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8
Motif4 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay