3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12323

Details:

PFam ID : PF12323

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 892

Average sequence length: 45.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12323	E5DQB6_9CAUD_119_258	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12323	A7RCJ8_PBCVA_38_83	98.7

Sequence based PCA Plot of the family - PF12323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=11
Motif2 Start=5 Length=17
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay