3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12320

Details:

PFam ID : PF12320

PFam Domain Description : Type 5 capsule protein repressor C-terminal domain

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 485

Average sequence length: 98.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12320	D9SZT1_MICAI_276_364	40.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12320	D0IIS2_9VIBR_265_326	70

Sequence based PCA Plot of the family - PF12320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=29 Length=8
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay