3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12319

Details:

PFam ID : PF12319

PFam Domain Description : Tryptophan-Threonine-rich plasmodium antigen C terminal

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 87

Average sequence length: 187.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12319	A5K5D6_PLAVS_76_290	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12319	Q6QUY6_PLAFA_54_274	100

Sequence based PCA Plot of the family - PF12319 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=160 Length=8
Motif2 Start=105 Length=8
Motif3 Start=183 Length=8
Motif4 Start=204 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay