3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12313

Details:

PFam ID : PF12313

PFam Domain Description : NPR1/NIM1 like defence protein C terminal

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 50

Average sequence length: 179

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12313	B9NDL7_POPTR_1_121	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12313	A9THW7_PHYPA_322_516	100

Sequence based PCA Plot of the family - PF12313 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay