3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12312

Details:

PFam ID : PF12312

PFam Domain Description : Nepovirus subgroup A polyprotein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 36

Average sequence length: 206.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12312	A0A9J8_ARMV_60_232	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12312	A0A9J8_ARMV_60_232	100

Sequence based PCA Plot of the family - PF12312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=95 Length=8
Motif3 Start=20 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay