3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12309

Details:

PFam ID : PF12309

PFam Domain Description : KIF-1 binding protein C terminal

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 84

Average sequence length: 293.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12309	E2BX88_9HYME_276_437	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12309	D2A380_TRICA_220_590	100

Sequence based PCA Plot of the family - PF12309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=24 Length=8
Motif3 Start=390 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay