3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12308

Details:

PFam ID : PF12308

PFam Domain Description : Neurogenesis glycoprotein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 20

Average sequence length: 92

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12308	C3YEW5_BRAFL_30_128	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12308	F1P6C4_CANFA_8_105	100

Sequence based PCA Plot of the family - PF12308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay