3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12301

Details:

PFam ID : PF12301

PFam Domain Description : CD99 antigen like protein 2

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 50

Average sequence length: 136.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12301	Q4SGH5_TETNG_92_167	19.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12301	E1BRC1_CHICK_12_167	100

Sequence based PCA Plot of the family - PF12301 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay