3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12288

Details:

PFam ID : PF12288

PFam Domain Description : Carboxysome shell peptide mid-region

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 52

Average sequence length: 294.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12288	A5EF42_BRASB_159_376	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12288	A5EF42_BRASB_159_376	100

Sequence based PCA Plot of the family - PF12288 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=141 Length=8
Motif3 Start=87 Length=8
Motif4 Start=151 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay