3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12287

Details:

PFam ID : PF12287

PFam Domain Description : Cytoplasmic activation/proliferation-associated protein-1 C term

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 26

Average sequence length: 246.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12287	B1WBD5_XENLA_419_752	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12287	B1WBD5_XENLA_419_752	100

Sequence based PCA Plot of the family - PF12287 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay