3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12284

Details:

PFam ID : PF12284

PFam Domain Description : Hox protein A13 N terminal

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 112

Average sequence length: 112.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12284	A6YED5_CHESE_17_77	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12284	F1NPG1_CHICK_1_111	99.0

Sequence based PCA Plot of the family - PF12284 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay