3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12271

Details:

PFam ID : PF12271

PFam Domain Description : Chitin synthase III catalytic subunit

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 87

Average sequence length: 272.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12271	A4R7X4_MAGO7_122_225	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12271	E3KLR2_PUCGT_49_326	100

Sequence based PCA Plot of the family - PF12271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=67 Length=8
Motif3 Start=229 Length=8
Motif4 Start=124 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay