3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12270

Details:

PFam ID : PF12270

PFam Domain Description : Cytochrome c oxidase subunit IV

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 119

Average sequence length: 129.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12270	E6PY63_9ZZZZ_2_75	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12270	Q4JWC8_CORJK_1_143	100

Sequence based PCA Plot of the family - PF12270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=17
Motif2 Start=1 Length=8
Motif3 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay