3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12269

Details:

PFam ID : PF12269

PFam Domain Description : CpG binding protein zinc finger C terminal domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 39

Average sequence length: 185.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12269	A8PYL5_BRUMA_135_367	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12269	E4Y774_OIKDI_215_456	100

Sequence based PCA Plot of the family - PF12269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay