3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12265

Details:

PFam ID : PF12265

PFam Domain Description : Histone-binding protein RBBP4 or subunit C of CAF1 complex

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 326

Average sequence length: 71.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12265	E9PIC4_HUMAN_18_66	35.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12265	Q9LKY0_MAIZE_1_70	100

Sequence based PCA Plot of the family - PF12265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay